Items where Author is "Read, Jonathan M."

Journal Article

Bridgen, Jessica R. E. and Lewis, Joseph M. and Todd, Stacy and Taegtmeyer, Miriam and Read, Jonathan M. and Jewell, Chris P. (2024) A Bayesian approach to identifying the role of hospital structure and staff interactions in nosocomial transmission of SARS-CoV-2. Interface, 21 (212): 20230525. ISSN 1742-5689

German, Esther L. and Nabwera, Helen M. and Robinson, Ryan and Shiham, Farah and Liatsikos, Kostas and Parry, Christopher M. and McNamara, Claire and Kattera, Sanjana and Carter, Katie and Howard, Ashleigh and Pojar, Sherin and Hamilton, Joshua and Matope, Agnes and Read, Jonathan M. and Allen, Stephen J. and Hill, Helen and Hawcutt, Daniel B. and Urban, Britta C. and Collins, Andrea M. and Ferreira, Daniela M. and Nikolaou, Elissavet (2023) Participant perceptions and experiences of a novel community-based respiratory longitudinal sampling method in Liverpool, UK : A mixed methods feasibility study. PLoS One, 18 (11): e0294133. ISSN 1932-6203

Eames, Ken T.D. and Tang, Maria L. and Hill, Edward M. and Tildesley, Michael J. and Read, Jonathan M. and Keeling, Matt J. and Gog, Julia R. (2023) Coughs, colds and “freshers’ flu” survey in the University of Cambridge, 2007–2008. Epidemics, 42: 100659. ISSN 1755-4365

Knight, Gwenan M. and Pham, Thi Mui and Stimson, James and Funk, Sebastian and Jafari, Yalda and Pople, Diane and Evans, Stephanie and Yin, Mo and Brown, Colin S. and Bhattacharya, Alex and Hope, Russell and Semple, Malcolm G. and Read, Jonathan M. and Cooper, Ben S. and Robotham, Julie V. (2022) The contribution of hospital-acquired infections to the COVID-19 epidemic in England in the first half of 2020. BMC Infectious Diseases, 22 (1): 556. ISSN 1471-2334

Yang, Bingyi and Lessler, Justin and Zhu, Huachen and Jiang, Chao Qiang and Read, Jonathan M. and Hay, James A and Kwok, Kin On and Shen, Ruiyin and Guan, Yi and Riley, Steven and Cummings, Derek A T (2020) Life course exposures continually shape antibody profiles and risk of seroconversion to influenza. PLoS Pathogens, 16 (7): e1008635. ISSN 1553-7366

Howlett, Patrick J. and Walder, Anna R. and Lisk, Durodami R. and Fitzgerald, Felicity and Sevalie, Stephen and Lado, Marta and N’Jai, Abdul and Brown, Colin S. and Sahr, Foday and Sesay, Foday and Read, Jonathan M. and Steptoe, Paul J. and Beare, Nicholas A.V. and Dwivedi, Reena and Solbrig, Marylou and Deen, Gibrilla F. and Solomon, Tom and Semple, Malcolm G. and Scott, Janet T. (2018) Case series of severe neurologic sequelae of ebola virus disease during epidemic, Sierra Leone. Emerging Infectious Diseases, 24 (8). pp. 1412-1421. ISSN 1080-6040

Inns, Thomas and Pulawska-Czub, Anna and Harris, John P and Vivancos, Roberto and Read, Jonathan M. and Beeching, Nicholas J and Allen, David J and Iturriza-Gomara, Miren and O'Brien, Sarah J (2017) Prospective cohort study to investigate the burden and transmission of acute gastroenteritis in care homes : a study protocol. BMJ Open, 7 (11): e018867. ISSN 2044-6055

Jiang, Chao Qiang and Lessler, Justin and Kim, Lina and Kwok, Kin On and Read, Jonathan M. and Wang, Shuying and Tan, Lijiu and Hast, Marisa and Zhu, Huachen and Guan, Yi and Riley, Steven and Cummings, Derek A T (2017) Cohort Profile : a study of influenza immunity in the urban and rural Guangzhou region of China: the Fluscape Study. International Journal of Epidemiology, 46 (2): e16. ISSN 0300-5771

Hungerford, D. and Read, Jonathan M. and Cooke, R. P. D. and Vivancos, R. and Iturriza-Gómara, M. and Allen, D. J. and French, N. and Cunliffe, N. (2016) Early impact of rotavirus vaccination in a large paediatric hospital in the UK. Journal of Hospital Infection, 93 (2). pp. 117-120. ISSN 0195-6701

Hungerford, Daniel and Vivancos, Roberto and Read, Jonathan M. and Pitzer, Virginia E. and Cunliffe, Nigel and French, Neil and Iturriza-Gómara, Miren (2016) In-season and out-of-season variation of rotavirus genotype distribution and age of infection across 12 European countries before the introduction of routine vaccination, 2007/08 to 2012/13. Eurosurveillance, 21 (2): 5. ISSN 1025-496X

Heinsbroek, Ellen and Tafatatha, Terence and Chisambo, Christina and Phiri, Amos and Mwiba, Oddie and Ngwira, Bagrey and Crampin, Amelia C. and Read, Jonathan M. and French, Neil (2016) Pneumococcal acquisition among infants exposed to HIV in rural Malawi : a longitudinal household study. American Journal of Epidemiology, 183 (1). pp. 70-78. ISSN 0002-9262

Althouse, Benjamin M. and Scarpino, Samuel V. and Meyers, Lauren Ancel and Ayers, John W. and Bargsten, Marisa and Baumbach, Joan and Brownstein, John S. and Castro, Lauren and Clapham, Hannah and Cummings, Derek A T and Del Valle, Sara and Eubank, Stephen and Fairchild, Geoffrey and Finelli, Lyn and Generous, Nicholas and George, Dylan and Harper, David R. and Hébert-Dufresne, Laurent and Johansson, Michael A. and Konty, Kevin and Lipsitch, Marc and Milinovich, Gabriel and Miller, Joseph D. and Nsoesie, Elaine O. and Olson, Donald R. and Paul, Michael and Polgreen, Philip M. and Priedhorsky, Reid and Read, Jonathan M. and Rodríguez-Barraquer, Isabel and Smith, Derek J. and Stefansen, Christian and Swerdlow, David L. and Thompson, Deborah and Vespignani, Alessandro and Wesolowski, Amy (2015) Enhancing disease surveillance with novel data streams : challenges and opportunities. EPJ Data Science, 4 (1): 17. pp. 1-8. ISSN 2193-1127

House, Thomas and Read, Jonathan M. and Danon, Leon and Keeling, Matthew J. (2015) Testing the hypothesis of preferential attachment in social network formation. EPJ Data Science, 4 (1): 13. ISSN 2193-1127

Heinsbroek, Ellen and Tafatatha, Terence and Phiri, Amos and Ngwira, Bagrey and Crampin, Amelia C and Read, Jonathan M. and French, Neil (2015) Persisting high prevalence of pneumococcal carriage among HIV-infected adults receiving antiretroviral therapy in Malawi : a cohort study. AIDS, 29 (14). pp. 1837-1844. ISSN 0269-9370

Kucharski, Adam J. and Lessler, Justin and Read, Jonathan M. and Zhu, Huachen and Jiang, Chao Qiang and Guan, Yi and Cummings, Derek A. T. and Riley, Steven (2015) Estimating the Life Course of Influenza A (H3N2) Antibody Responses from Cross-Sectional Data. Plos Biology, 13 (3): 1002082. ISSN 1544-9173

Chantrey, Julian and Dale, Timothy D. and Read, Jonathan M. and White, Steve and Whitfield, Fiona and Jones, David and McInnes, Colin J. and Begon, Michael (2014) European red squirrel population dynamics driven by squirrelpox at a gray squirrel invasion interface. Ecology and Evolution, 4 (19). pp. 3788-3799. ISSN 2045-7758

Kwok, Kin O. and Cowling, Benjamin J. and Wei, Vivian W. I. and Wu, Kendra M. and Read, Jonathan M. and Lessler, Justin and Cummings, Derek A. and Peiris, J. S. Malik and Riley, Steven (2014) Social contacts and the locations in which they occur as risk factors for influenza infection. Proceedings of the Royal Society B: Biological Sciences, 281 (1789): 20140709. ISSN 0962-8452

Pinsent, Amy and Read, Jonathan M. and Griffin, Jamie T. and Smith, Valerie and Gething, Peter W. and Ghani, Azra C. and Pasvol, Geoffrey and Hollingsworth, T. Deirdre (2014) Risk factors for UK Plasmodium falciparum cases. Malaria Journal, 13: 298. ISSN 1475-2875

Kucharski, Adam J. and Kwok, Kin O. and Wei, Vivian W. I. and Cowling, Benjamin J. and Read, Jonathan M. and Lessler, Justin and Cummings, Derek A. and Riley, Steven (2014) The Contribution of Social Behaviour to the Transmission of Influenza A in a Human Population. PLoS Pathogens, 10 (6): 1004206. ISSN 1553-7366

Read, Jonathan M. and Lessler, Justin and Riley, Steven and Wang, Shuying and Tan, Li Jiu and Kwok, Kin On and Guan, Yi and Jiang, Chao Qiang and Cummings, Derek A. T. (2014) Social mixing patterns in rural and urban areas of southern China. Proceedings of the Royal Society B: Biological Sciences, 281 (1785): 20140268. ISSN 0962-8452

Danon, Leon and Read, Jonathan M. and House, Thomas A. and Vernon, Matthew C. and Keeling, Matt J. (2013) Social encounter networks : characterizing Great Britain. Proceedings of the Royal Society B: Biological Sciences, 280 (1765): 20131037. ISSN 0962-8452

Danon, Leon and House, Thomas A. and Read, Jonathan M. and Keeling, Matt J. (2012) Social encounter networks : collective properties and disease transmission. Interface, 9 (76). pp. 2826-2833. ISSN 1742-5689

Lessler, Justin and Riley, Steven and Read, Jonathan M. and Wang, Shuying and Zhu, Huachen and Smith, Gavin J. D. and Guan, Yi and Jiang, Chao Qiang and Cummings, Derek A. T. (2012) Evidence for antigenic seniority in influenza A (H3N2) antibody responses in Southern China. PLoS Pathogens, 8 (7): 1002802. ISSN 1553-7374

House, Thomas and Baguelin, Marc and Van Hoek, Albert Jan and White, Peter J. and Sadique, Zia and Eames, Ken and Read, Jonathan M. and Hens, Niel and Melegaro, Alessia and Edmunds, W. John and Keeling, Matt J. (2011) Modelling the impact of local reactive school closures on critical care provision during an influenza pandemic. Proceedings of the Royal Society B: Biological Sciences, 278 (1719). pp. 2753-2760. ISSN 0962-8452

Lessler, Justin and Cummings, Derek A. T. and Read, Jonathan M. and Wang, Shuying and Zhu, Huachen and Smith, Gavin J. D. and Guan, Yi and Jiang, Chao Qiang and Riley, Steven (2011) Location-specific patterns of exposure to recent pre-pandemic strains of influenza A in southern China. Nature Communications, 2: 423. ISSN 2041-1723

Eames, Ken T. D. and Read, Jonathan M. and Edmunds, W. John (2009) Epidemic prediction and control in weighted networks. Epidemics, 1 (1). pp. 70-76. ISSN 1755-4365

Read, Jonathan M. and Eames, Ken T. D. and Edmunds, W. John (2008) Dynamic social networks and the implications for the spread of infectious disease. Interface, 5 (26). pp. 1001-1007. ISSN 1742-5689

Read, Jonathan M. and Keeling, Matt J. (2007) Stochasticity generates an evolutionary instability for infectious disease. Ecology Letters, 10 (9). pp. 818-827. ISSN 1461-023X

Read, Jonathan M. and Keeling, Matt J. (2006) Disease evolution across a range of spatio-temporal scales. Theoretical Population Biology, 70 (2). pp. 201-213. ISSN 0040-5809

Keeling, Matt J. and Jiggins, F. M. and Read, Jonathan M. (2003) The invasion and coexistence of competing Wolbachia strains. Heredity, 91 (4). pp. 382-388. ISSN 0018-067X

Read, Jonathan M. and Keeling, Matt J. (2003) Disease evolution on networks : the role of contact structure. Proceedings of the Royal Society B: Biological Sciences, 270 (1516). pp. 699-708. ISSN 0962-8452

Read, Jonathan M. and Birch, Colin P. D. and Milne, John A. (2002) HeathMod : a model of the impact of seasonal grazing by sheep on upland heaths dominated by Calluna vulgaris (heather). Biological Conservation, 105 (3). pp. 279-292. ISSN 0006-3207

Lingjaerde, Ole C. and Stenseth, Nils Chr. and Kristoffersen, Anja B. and Smith, Robert H. and Moe, S. Jannicke and Read, Jonathan M. and Daniels, Susan and Simkiss, Ken (2001) Exploring the density-dependent structure of blowfly populations by nonparametric additive modeling. Ecology, 82 (9). pp. 2645-2658. ISSN 0012-9658

Contribution in Book/Report/Proceedings

Eames, Ken T. D. and Read, Jonathan M. (2008) Networks in epidemiology. In: Bio-inspired computing and communication : First Workshop on Bio-Inspired Design of Networks, BIOWIRE 2007 Cambridge, UK, April 2-5, 2007 Revised Selected Papers. Lecture Notes in Computer Science . Springer Verlag, GBR, pp. 79-90. ISBN 9783540921905