Viral forensic genomics reveals the relatedness of classic herpes simplex virus strains KOS, KOS63, and KOS79

Bowen, Christopher D. and Renner, Daniel W. and Shreve, Jacob T. and Tafuri, Yolanda and Payne, Kimberly M. and Dix, Richard D. and Kinchington, Paul R. and Gatherer, Derek and Szpara, Moriah L. (2016) Viral forensic genomics reveals the relatedness of classic herpes simplex virus strains KOS, KOS63, and KOS79. Virology, 492. pp. 179-186. ISSN 0042-6822

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Abstract

Herpes simplex virus 1 (HSV-1) is a widespread global pathogen, of which the strain KOS is one of the most extensively studied. Previous sequence studies revealed that KOS does not cluster with other strains of North American geographic origin, but instead clustered with Asian strains. We sequenced a historical isolate of the original KOS strain, called KOS63, along with a separately isolated strain attributed to the same source individual, termed KOS79. Genomic analyses revealed that KOS63 closely resembled other recently sequenced isolates of KOS and was of Asian origin, but that KOS79 was a genetically unrelated strain that clustered in genetic distance analyses with HSV-1 strains of North American/European origin. These data suggest that the human source of KOS63 and KOS79 could have been infected with two genetically unrelated strains of disparate geographic origins. A PCR RFLP test was developed for rapid identification of these strains.

Item Type:
Journal Article
Journal or Publication Title:
Virology
Additional Information:
This is the author’s version of a work that was accepted for publication in Virology. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be reflected in this document. Changes may have been made to this work since it was submitted for publication. A definitive version was subsequently published in Virology, 492, 2016 DOI: 10.1016/j.virol.2016.02.013
Uncontrolled Keywords:
/dk/atira/pure/subjectarea/asjc/2400/2406
Subjects:
ID Code:
78734
Deposited By:
Deposited On:
16 Mar 2016 09:22
Refereed?:
Yes
Published?:
Published
Last Modified:
31 Mar 2020 03:59