Items where Author is "Zhao, Jun"

Belhajjame, Khalid and Zhao, Jun and Garijo, Daniel and Gamble, Matthew and Hettne, Kristina and Palma, Raul and Mina, Eleni and Corcho, Oscar and Gómez-pérez, José Manuel and Bechhofer, Sean and Klyne, Graham and Goble, Carole (2015) Using a suite of ontologies for preserving workflow-centric research objects. Journal of Web Semantics, 32. pp. 16-42. ISSN 1570-8268

Hettne, Kristina M. and Dharuri, Harish and Zhao, Jun and Wolstencroft, Katherine and Belhajjame, Khalid and Soiland-Reyes, Stian and Mina, Eleni and Thompson, Mark and Cruickshank, Don and Verdes-Montenegro, Lourdes and Garrido, Julian and de Roure, David and Corcho, Oscar and Klyne, Graham and van Schouwen, Reinout and 't Hoen, Peter A. C. and Bechhofer, Sean and Goble, Carole and Roos, Marco (2014) Structuring research methods and data with the research object model : genomics workflows as a case study. Journal of Biomedical Semantics, 5: 41. ISSN 2041-1480

Gómez-Pérez, José Manuél and García-Cuesta, Esteban and Zhao, Jun and Garrido, Aleix and Ruiz, José Enrique (2013) How reliable is your workflow : monitoring decay in scholarly publications. In: Proceedings of the 3rd Workshop on Semantic Publishing (SePublica 2013) : 10th Extended Semantic Web Conference Montpellier, France, 26 May 2013. CEUR Workshop Proceedings, pp. 75-86.

Belhajjame, Khalid and Cheney, James and Corsar, David and Garijo, Daniel and Soiland-Reyes, Stian and Zednik, Stephan and Zhao, Jun (2013) PROV-O: The PROV ontology : W3C recommendation 30 April 2013. UNSPECIFIED.

Mina, Eleni and Thompson, Mark and Kaliyaperumal, Rajaram and Zhao, Jun and Hettne, Kristina M. and Schultes, Erik and Roos, Marco (2013) Nanopublications for exposing experimental data in the life-sciences : a Huntington's Disease case study. In: SWAT4LS 2013 Semantic Web Applications and Tools for Life Sciences : Proceedings of the 6th International Semantic Web Application Tools Life Scences Workshop (SWAT4LS 2013). CEUR Workshop Proceedings.

Gómez-pérez, José Manuel and García-cuesta, Esteban and Garrido, Aleix and Ruiz, José Enrique and Zhao, Jun and Klyne, Graham (2013) When history matters : assessing reliability for the reuse of scientific workflows. In: The semantic web – ISWC 2013 : 12th International Semantic Web Conference, Sydney, NSW, Australia, October 21-25, 2013, Proceedings, Part II. Lecture Notes in Computer Science . Springer Verlag, Berlin, pp. 81-97. ISBN 9783642413377

Belhajjame, Khalid and Zhao, Jun and Garijo, Daniel and Garrido, Aleix and Soiland-reyes, Stian and Alper, Pinar and Corcho, Oscar (2013) A workflow PROV-corpus based on taverna and wings. In: EDBT '13 Proceedings of the Joint EDBT/ICDT 2013 Workshops :. ACM, GBR, pp. 331-332. ISBN 9781450315999

Gamble, Matthew and Goble, Carole and Klyne, Graham and Zhao, Jun (2012) MIM: A Minimum Information Model vocabulary and framework for scientific linked data. In: E-Science (e-Science), 2012 IEEE 8th International Conference on :. IEEE, GBR, pp. 1-8. ISBN 9781467344678

Zhao, Jun and Gomez-perez, Jose Manuel and Belhajjame, Khalid and Klyne, Graham and Garcia-cuesta, Esteban and Garrido, Aleix and Hettne, Kristina and Roos, Marco and De Roure, David and Goble, Carole (2012) Why workflows break : understanding and combating decay in Taverna workflows. In: E-Science (e-Science), 2012 IEEE 8th International Conference on :. IEEE, GBR, pp. 1-9. ISBN 9781467344678

Deus, Helena F. and Prud’hommeaux, Eric and Miller, Michael and Zhao, Jun and Malone, James and Adamusiak, Tomasz and Mccusker, Jim and Das, Sudeshna and Rocca Serra, Philippe and Fox, Ronan and Marshall, M. Scott (2012) Translating standards into practice : one semantic web API for gene expression. Journal of Biomedical Informatics, 45 (4). pp. 782-794. ISSN 1532-0464

Marshall, M. Scott and Boyce, Richard and Deus, Helena F. and Zhao, Jun and Willighagen, Egon L. and Samwald, Matthias and Pichler, Elgar and Hajagos, Janos and Prud’hommeaux, Eric and Stephens, Susie (2012) Emerging practices for mapping and linking life sciences data using RDF : a case series. Journal of Web Semantics, 14. pp. 2-13. ISSN 1570-8268

Zhao, Jun and Klyne, Graham and Holubowicz, Piotr and Palma, Raúl and Soiland-Reyes, Stian and Hettne, Kristina and Ruiz, José Enrique and Roos, Marco and Page, Kevin and Gómez-Pérez, José Manuel and de Roure, David and Goble, Carole (2012) RO-manager : a tool for creating and manipulating research objects to support reproducibility and reuse in sciences. In: Proceedings of the Second International Workshop on Linked Science 2012 - Tackling Big Data :. CEUR Workshop Proceedings.

Zhao, Jun and Hartig, Olaf (2012) Towards interoperable provenance publication on the Linked Data Web. In: LDOW 2012 linked data on the web : WWW2012 workshop on linked data on the web. CEUR Workshop Proceedings.

Belhajjame, Khalid and Corcho, Oscar and Garijo, Daniel and Zhao, Jun and Missier, Paolo and Newman, David and Palma, Raúl and Bechhofer, Sean and Garcia-Cuesta, Esteban and Gomez-Perez, Jose-Manuel (2012) Workflow-centric research objects : first class citizens in scholarly discourse. In: Proceedings of the ESWC2012 Workshop on the Future of Scholarly Communication in the Semantic Web :. UNSPECIFIED.

Alexander, Keith and Cyganiak, Richard and Hausenblas, Michael and Zhao, Jun (2011) Describing linked datasets with the VoID vocabulary. UNSPECIFIED.

Zhao, Jun and Sahoo, S.S. and Missier, P. and Sheth, A. and Goble, C. (2011) Extending semantic provenance into the web of data. IEEE Internet Computing, 15 (1). pp. 40-48. ISSN 1089-7801

Zhao, Jun and Corcho, Oscar and Missier, Paolo and Belhajjame, Khalid and Newman, David and De Roure, David and Goble, Carole (2011) eScience. In: Handbook of semantic web technologies :. Springer, Berlin, pp. 701-736. ISBN 9783540929123

Luciano, Joanne S. and Andersson, Bosse and Batchelor, Colin and Bodenreider, Olivier and Clark, Tim and Denney, Christine K. and Domarew, Christopher and Gambet, Thomas and Harland, Lee and Jentzsch, Anja and Zhao, Jun (2011) The translational medicine ontology and knowledge base : driving personalized medicine by bridging the gap between bench and bedside. Journal of Biomedical Semantics, 2 (Suppl ): S1. ISSN 2041-1480

Samwald, Matthias and Dumontier, Michel and Zhao, Jun and Luciano, Joanne S and Marshall, Michael Scott and Cheung, Kei (2010) Integrating findings of traditional medicine with modern pharmaceutical research : the potential role of linked open data. Chinese Medicine, 5 (1): 43.

Miles, Alistair and Zhao, Jun and Klyne, Graham and White-Cooper, Helen and Shotton, David (2010) OpenFlyData : an exemplar data web integrating gene expression data on the fruit fly Drosophila melanogaster. Journal of Biomedical Informatics, 43 (5). pp. 752-761. ISSN 1532-0464

Zhao, Jun (2010) Publishing Chinese medicine knowledge as Linked Data on the Web. Chinese Medicine, 5 (1): 27.

Zhao, Jun and Klyne, Graham and Benson, Elizabeth and Gudmannsdottir, Elin and White-Cooper, Helen and Shotton, David (2010) FlyTED : the Drosophila Testis Gene Expression Database. Nucleic Acids Research, 38 (Suppl.). D710-D715. ISSN 0305-1048

Missier, Paolo and Sahoo, Satya and Zhao, Jun and Goble, Carole and Sheth, Amit (2010) Janus : from workflows to semantic provenance and linked open data. In: Provenance and annotation of data and processes : Third International Provenance and Annotation Workshop, IPAW 2010, Troy, NY, USA, June 15-16, 2010. Revised Selected Papers. Lecture Notes in Computer Science . Springer, Berlin, pp. 129-141. ISBN 9783642178184

Hartig, Olaf and Zhao, Jun (2010) Publishing and consuming provenance metadata on the web of linked data. In: Provenance and annotation of data and processes: Revised Selected Papers of the Third International Provenance and Annotation Workshop (IPAW 2010) :. Lecture Notes in Computer Science . Springer Verlag, Berlin, pp. 78-90. ISBN 978-3-642-17818-4

Ding, Li and Bao, Jie and Michaelis, James and Zhao, Jun and McGuinness, Deborah (2010) Reflections on provenance ontology encodings. In: Provenance and annotation of data and processes : Third International Provenance and Annotation Workshop, IPAW 2010, Troy, NY, USA, June 15-16, 2010. Revised Selected Papers. Lecture Notes in Computer Science . Springer, Berlin, pp. 198-205. ISBN 9783642178184

Roure, David De and Goble, Carole and Aleksejevs, Sergejs and Bechhofer, Sean and Bhagat, Jiten and Cruickshank, Don and Fisher, Paul and Kollara, Nandkumar and Michaelides, Danius and Missier, Paolo and Zhao, Jun (2010) The evolution of myexperiment. In: e-Science (e-Science), 2010 IEEE Sixth International Conference on :. IEEE, pp. 153-160. ISBN 9781424489572

Cheung, Kei-Hoi and Frost, H. Robert and Marshall, M. Scott and Prud'hommeaux, Eric and Samwald, Matthias and Zhao, Jun and Paschke, Adrian (2009) A journey to Semantic Web query federation in the life sciences. BMC Bioinformatics, 10 (Suppl.): S10. ISSN 1471-2105

Zhao, Jun and Miles, Alistair and Klyne, Graham and Shotton, David (2009) Linked data and provenance in biological data webs. Briefings in Bioinformatics, 10 (2). pp. 139-152. ISSN 1467-5463

Alexander, Keith and Cyganiak, Richard and Hausenblas, Michael and Zhao, Jun (2009) Describing linked datasets. In: Proceedings of the WWW2009 Workshop on Linked Data on the Web :. CEUR Workshop Proceedings.

Jentzsch, Anja and Zhao, Jun and Hassanzadeh, Oktie and Cheung, Kei-Hoi and Samwald, Matthias and Andersson, Bo (2009) Linking open drug data. In: 5th International Conference on Semantic Systems, Graz, Austria, September 2-4, 2009. Proceedings. :. Verlag der Technischen Universität Graz, Graz. ISBN 9783851250602

Zhao, Jun and Miles, Alistair and Klyne, Graham and Shotton, David (2009) OpenFlyData : the way to go for biological data integration. In: Data integration in the life sciences : 6th International Workshop, DILS 2009, Manchester, UK, July 20-22, 2009. Proceedings. Lecture Notes in Computer Science . Springer, Berlin, pp. 47-54. ISBN 9783642028786

Hartig, Olaf and Zhao, Jun (2009) Using web data provenance for quality assessment. In: Proceedings of the International Workshop on the role of Semantic Web in Provenance Management, Washington DC, USA :. CEUR Workshop Proceedings.

Zhao, Jun and Goble, Carole and Stevens, Robert and Turi, Daniele (2008) Mining Taverna's semantic web of provenance. Concurrency and Computation: Practice and Experience, 20 (5). pp. 463-472. ISSN 1532-0626

Moreau, Luc and Ludäscher, Bertram and Altintas, Ilkay and Barga, Roger S. and Bowers, Shawn and Callahan, Steven and Chin Jr, George and Clifford, Ben and Cohen, Shirley and Cohen-Boulakia, Sarah and Zhao, Jun (2008) Special Issue : the first Provenance Challenge. Concurrency and Computation: Practice and Experience, 20 (5). pp. 409-418. ISSN 1532-0626

Zhao, Jun and Klyne, Graham and Shotton, David (2008) Building a semantic web image repository for biological research images. In: The semantic web: research and applications : 5th European Semantic Web Conference, ESWC 2008, Tenerife, Canary Islands, Spain, June 1-5, 2008 Proceedings. Lecture Notes in Computer Science . Springer, Berlin, pp. 154-169. ISBN 9783540682332

Missier, Paolo and Belhajjame, Khalid and Zhao, Jun and Roos, Marco and Goble, Carole (2008) Data lineage model for Taverna workflows with lightweight annotation requirements. In: Provenance and annotation of data and processes : Second International Provenance and Annotation Workshop, IPAW 2008, Salt Lake City, UT, USA, June 17-18, 2008. Revised Selected Papers. Lecture Notes in Computer Science . Springer, Berlin, pp. 17-30. ISBN 9783540899648

Zhao, Jun and Klyne, Graham and Shotton, David (2008) Provenance and linked data in biological data webs. In: Proceedings of the 17th International World Wide Web Conference WWW2008 (Workshop: Linked Data on the Web LDOW2008) :. UNSPECIFIED, p. 2008.

Stevens, Robert and Zhao, Jun and Goble, Carole (2007) Using provenance to manage knowledge of In Silico experiments. Briefings in Bioinformatics, 8 (3). pp. 183-194. ISSN 1467-5463

Goble, Carole and Wolstencroft, Katy and Goderis, Antoon and Hull, Duncan and Zhao, Jun and Alper, Pinar and Lord, Phillip and Wroe, Chris and Belhajjame, Khalid and Turi, Daniele and Stevens, Robert (2007) Knowledge discovery for biology with Taverna. In: Semantic web : revolutionizing knowledge discovery in the life sciences. Springer, New York, pp. 355-395. ISBN 9780387484365

Oinn, Tom and Li, Peter and Kell, Douglas B and Goble, Carole and Goderis, Antoon and Greenwood, Mark and Hull, Duncan and Stevens, Robert and Turi, Daniele and Zhao, Jun (2007) Taverna/my Grid : aligning a workflow system with the life sciences community. In: Workflows for e-Science : scientific workflows for grids. Springer, London, pp. 300-319. ISBN 9781846285196

Zhao, Jun and Goble, Carole and Stevens, Robert (2006) An identity crisis in the life sciences. In: Provenance and Annotation of Data : International Provenance and Annotation Workshop, IPAW 2006, Chicago, IL, USA, May 3-5, 2006, Revised Selected Papers. Lecture Notes in Computer Science . Springer, Berlin, pp. 254-269. ISBN 9783540463023

Zhao, Jun and Lord, Phillip and Alper, Pinar and Wroe, Chris and Goble, Carole (2005) The implications of Semantic Web technologies for support of the e-Science process. In: Proceedings of the UK e-Science All Hands Meeting 2005 :. UNSPECIFIED, pp. 1-8.

Zhao, Jun and Goble, Carole and Stevens, Robert (2004) Semantic web applications to e-science in silico experiments. In: WWW Alt. '04 Proceedings of the 13th international World Wide Web conference on Alternate track papers & posters :. ACM, New York, pp. 284-285. ISBN 1581139128

Zhao, Jun and Goble, Carole and Stevens, Robert and Bechhofer, Sean (2004) Semantically linking and browsing provenance logs for e-science. In: Semantics of a Networked World. Semantics for Grid Databases : First International IFIP Conference, ICSNW 2004, Paris, France, June 17-19, 2004, Revised Selected Papers. Lecture Notes in Computer Science . Springer Verlag, Berlin, pp. 158-176. ISBN 9783540236092

Zhao, Jun and Wroe, Chris and Goble, Carole and Stevens, Robert and Quan, Dennis and Greenwood, Mark (2004) Using semantic web technologies for representing e-science provenance. In: The Semantic Web--ISWC 2004 : Third International Semantic Web Conference, Hiroshima, Japan, November 7-11, 2004. Proceedings. Lecture Notes in Computer Science . Springer, Berlin, pp. 92-106. ISBN 9783540237983

Zhao, Jun and Goble, Carole and Greenwood, Mark and Wroe, Chris and Stevens, Robert (2003) Annotating, linking and browsing provenance logs for e-Science. In: Proceedings of the Workshop on Semantic Web Technologies for Searching and Retrieving Scientific Data :. UNSPECIFIED, pp. 158-176.