The Microphenotron:a robotic miniaturized plant phenotyping platform with diverse applications in chemical biology

Burrell, Thomas Ian and Fozard, Susan and Holroyd, Geoffrey Heys and French, Andrew P. and Pound, Michael P. and Bigley, Christopher and Taylor, Charles James and Forde, Brian Gordon (2017) The Microphenotron:a robotic miniaturized plant phenotyping platform with diverse applications in chemical biology. Plant Methods, 13. ISSN 1746-4811

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Abstract

Background: Chemical genetics provides a powerful alternative to conventional genetics for understanding gene function. However, its application to plants has been limited by the lack of a technology that allows detailed phenotyping of whole-seedling development in the context of a high throughput chemical screen. We have therefore sought to develop an automated micro-phenotyping platform that would allow both root and shoot development to be monitored under conditions where the phenotypic effects of large numbers of small molecules can be assessed. Results: The ‘Microphenotron’ platform uses 99-well microtitre plates to deliver chemical treatments 23 to seedlings of Arabidopsis thaliana L. and is based around four components: (a) the ‘Phytostrip’, a novel seedling growth device that enables chemical treatments to be combined with the automated capture of images of developing roots and shoots; (b) an illuminated robotic platform that uses commercially available robotic manipulator to capture images of developing shoots and roots; (c) software to control the sequence of robotic movements and integrate these with the image capture process; (d) purpose-made image analysis software for automated extraction of quantitative phenotypic data. Imaging of each plate (representing 80 separate assays) takes 4 min and can easily be performed daily for time-course studies. As currently configured, the Microphenotron has a capacity of 54 microtitre plates in a growth room footprint of 2.1 m2, giving a potential throughput of up to 4320 chemical treatments in a typical 10 d experiment. The Microphenotron has been validated by using it to screen a collection of 800 natural compounds for qualitative effects on root development and to perform a quantitative analysis of the effects of a range of concentrations of nitrate and ammonium on seedling development. Conclusions: The Microphenotron is an automated screening platform that for the first time is able to combine large numbers of individual chemical treatments with a detailed analysis of whole-seedling development, and particularly root system development. The Microphenotron should provide a powerful new tool for chemical genetics and for wider chemical biology applications, including the development of natural and synthetic chemical products for improved agricultural sustainability.

Item Type: Journal Article
Journal or Publication Title: Plant Methods
Uncontrolled Keywords: /dk/atira/pure/subjectarea/asjc/1300/1305
Subjects:
Departments: Faculty of Science and Technology > Engineering
Faculty of Science and Technology > Lancaster Environment Centre
Faculty of Health and Medicine > Biomedical & Life Sciences
ID Code: 84838
Deposited By: ep_importer_pure
Deposited On: 23 Feb 2017 14:20
Refereed?: Yes
Published?: Published
Last Modified: 11 Feb 2020 03:17
URI: https://eprints.lancs.ac.uk/id/eprint/84838

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