A genome‐scale metabolic reconstruction of soybean and Bradyrhizobium diazoefficiens reveals the cost–benefit of nitrogen fixation

Holland, Bethany L. and Matthews, Megan L. and Bota, Pedro and Sweetlove, Lee J. and Long, Stephen P. and diCenzo, George C. (2023) A genome‐scale metabolic reconstruction of soybean and Bradyrhizobium diazoefficiens reveals the cost–benefit of nitrogen fixation. New Phytologist, 240 (2). pp. 744-756. ISSN 0028-646X

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Abstract

Nitrogen-fixing symbioses allow legumes to thrive in nitrogen-poor soils at the cost of diverting some photoassimilate to their microsymbionts. Effort is being made to bioengineer nitrogen fixation into nonleguminous crops. This requires a quantitative understanding of its energetic costs and the links between metabolic variations and symbiotic efficiency. A whole-plant metabolic model for soybean (Glycine max) with its associated microsymbiont Bradyrhizobium diazoefficiens was developed and applied to predict the cost–benefit of nitrogen fixation with varying soil nitrogen availability. The model predicted a nitrogen-fixation cost of c. 4.13 g C g −1 N, which when implemented into a crop scale model, translated to a grain yield reduction of 27% compared with a non-nodulating plant receiving its nitrogen from the soil. Considering the lower nitrogen content of cereals, the yield cost to a hypothetical N-fixing cereal is predicted to be less than half that of soybean. Soybean growth was predicted to be c. 5% greater when the nodule nitrogen export products were amides versus ureides. This is the first metabolic reconstruction in a tropical crop species that simulates the entire plant and nodule metabolism. Going forward, this model will serve as a tool to investigate carbon use efficiency and key mechanisms within N-fixing symbiosis in a tropical species forming determinate nodules.

Item Type:
Journal Article
Journal or Publication Title:
New Phytologist
Uncontrolled Keywords:
/dk/atira/pure/subjectarea/asjc/2700
Subjects:
?? CARBON COSTSSOYBEANMATHEMATICAL MODELNITROGEN FIXATIONNITROGEN METABOLISMROOT NODULEMEDICINE(ALL) ??
ID Code:
203195
Deposited By:
Deposited On:
04 Sep 2023 10:45
Refereed?:
Yes
Published?:
Published
Last Modified:
31 Oct 2023 04:00